Since this was brought up again, I just looked at the two front doors. When driving, I thought the wind noise was coming from the window not closing all the way. I now see that it is the door itself. There is a bigger gap between the roof and the driver-side door than there is on the passenger side. This gap is towards the rear-side of the door.

The rubber strip gets squashed more on the passenger side, where it just touches on the drivers side. Looks like a little foam strip in the area should take care of the little gap.