there were previous threads i posted in addressing this.
I installed a completely new head unit with a direct AUX-in so that the Ipod could be plugged in using a male-male stereo wire.
click here for the thread with pix/install
and click here for the thread showing how to connect ipod
don't go for the FM transmitter things. I used one for a while (griffin itrip) but then sold it to somebody else. the static just doesn't cut it. with a direct aux-in sound is much, much cleaner.
you could also buy a cable to hook up your ipod to the stock head unit as if it were a 6-cd changer.