Let's just get it straight that some options are directly installed at the Toyota plant and the dealer will not be aware of any of the options on the car they are getting until they receive their vehicle inquiry reports. I recommend to ask for this report on the car you want, the dealer should have this report if the car is still on stock.
That's why some dealers have different options on the stock they get and the sales people will try to sway you from getting that car by telling you that it is a mandatory option.

The options that are usually installed by the dealer are like:

Finish wax (coat protector) for $1500
Wood Grain for $2000
Geo Tracker GPS for $3000

I saw these options on the car I test drove and I just laughed at the sales rep trying to sell me this crap. Usually the stupid, nonsensical items that has a 1000-2000% mark up would be installed by the dealer.

The remote starter at $595 is installed directly by Toyota Motor Inc's factory plant.